PUBLICATIONS
28. Xiaoyi Zeng, Annabella C. Wong, Michael J.W. Boyle, Jonathan D. Cybulski, Bartosz M. Majcher, Coskun Güçlü, Xiangshi Kong, Timothy C. Bonebrake, Paul Eggleton, David M. Baker, Hannah M. Griffiths, Louise A. Ashton. “Soil invertebrates facilitate plant nitrogen assimilation in a tropical seasonal secondary forest”. Current Biology. 36(9), pp. R375–R376. https://doi.org/10.1016/j.cub.2026.03.015
27. Erin M. Dillon, Rodnyel Arosemena, Jonathan D. Cybulski, Brígida De Gracia, Seth Finnegan, Chien-Hsiang Lin, Javiera Mora, Sven Pallacks, Aaron O'Dea. (2025). “Fossil otolith assemblages reveal millennial-scale changes in reef fish biomass and trophic structure across the Isthmus of Panama”. Phil. Trans. R. Soc. B. 381: 20240419.
https://doi.org/10.1098/rstb.2024.0419
26. Sharpe, A.E., Smith-Guzmán, N.E., Pérez, C.P.D., Herrera, L.A.S., Carvajal-Contreras, D., Curtis, J., Cybulski, J.D., Desjardins, B., Isaza-Aizpurúa, I., Kamenov, G. and Núñez-Cortés, Y. (2025). “Isotopic evidence of increased societal diversification in Pre-Columbian Panama”. PLOS ONE, 20(11), p. e0335678. https
://doi.org/10.1371/journal.pone.0335678
25. Veronica Pace, Jonathan D. Cybulski, Nicole Smith-Guzmám, and Ashley Sharpe. (2025). “Aproximación isotópica a las prácticas de lactancia y destete de tres poblaciones precolombinas de Panamá”. Revista Argentina de Antropología Biológica. https://doi.org/10.24215/18536387e111
24. Aaron O'Dea, Andrew J Sellers, Carmen Pérez Medina, Javier Pardo Díaz, Alexandra Sofia Guzman Bloise, Christopher Pöhlker, Michał T Chiliński, Hedy M. Aardema, Jonathan D Cybulski, Lena Heins, Steven R Paton, Hans A. Slagter, Ralf Schiebel, Gerald H. Haug. (2025). “Unprecedented suppression of Panama's Pacific upwelling in 2025”. PNAS.
https://doi.org/10.1073/pnas.2512056122
23. Aaron O'Dea, Erin M. Dillon, Simon J. Brandl, Katie L. Cramer, Jonathan D. Cybulski, Brígida de Gracia, Kimberly García-Méndez, Katherine Griswold, Chien-Hsiang Lin, Matthieu Leray, Jessica A. Lueders-Dumont, Andrew J. Sellers, Thomas A. Wake. (2025). “Prehistoric archives reveal evidence of predator loss and prey release in Caribbean reef fish communities”. PNAS. https://doi.org/10.1073/pnas.2503986122
22. Jonathan D. Cybulski, Ashley Sharpe, Yahaira Núñez Cortés, Nicole Smith-Guzmán, Ilean Isaza, Diana Rocio Carvajal Contreras, Susan Monge, Erin Dillon, Brigida De Gracia, Irene Garcia#, Aaron O’Dea. (2025). “Historical ecology of the Southern Central American Pacific coast”. Phil. Trans. R. Soc. B. https://doi.org/10.1098/rstb.2024.0042
21. Smith, J.A., Dowding, E.M., … Cybulski, J.D., … Kiessling, W. 1 of 120+ co-authors (2025). “Identifying the big questions in paleontology: A community- driven project.” Paleobiology. 51(3):408-431. h
ttps://doi.org/10.1017/pab.2025.10042
20. Nicole Smith-Guzmán, Jeny Smid Núñez, Jonathan D. Cybulski, Luis Sánchez Herrera. (2024). “Biodistance Analysis via Dental Phenotypic Diversity in Early Collective Burials at Cerro Juan Díaz, Panamá (30–650 CE)”. American Journal of Biological Anthropology. https://doi.org/10.1002/ajpa.25050
19. Ralf Schiebel, Hedy M. Aardema, Maria Ll. Calleja, Antonis Dragoneas, Lena Heins, Isabella Hrabe de Angelis, Christopher Pöhlker, Hans Slagter, Hubert Vonhof, David Walter, Anthea I. Arns, Nils Adolphs, Alexandra Auderset, Sanja Basic, Aaron Bieler, Jan D. Brüwer, Sonia Chaabane, Yafang Cheng, Michal T. Chiliński, Jonathan D. Cybulski, Thomas Disper, Nicolas Duprey, Gregor Eichele, Björn Fiedler, Alexa Fischer, Alan D. Foreman, Bernhard M. Fuchs, Steve Galer, Jana Härri, Klaus Peter Jochum, Adrian Jost, Jonathan Jung, Henry Kleta, Gerhard Lammel, Otto Larink, Patrick Leibold, Alfredo Martínez-García, Simone Moretti, Jann-Gerrit Müller, Björn Nillius, Xihao Pan, Subha S. Raj, Janne Repschläger, Elizandro Rodrigues, S. Emil Ruff, Mareike Schmitt, Janine L. Schmitter, Andrew Sellers Lara, Péricles Silva, Sandi M. Smart, Matthias Sörgel, Brigitte Stoll, Hang Su, Meike Vogt, Tanja Wald, Bettina Weber, Jens Weber, Ulrike Weis, Rudolf Amann, Javier Arístegui, Thorsten Dittmar, Melchor González, Aaron O’Dea, Ulrich Pöschl, Gerald H. Haug. (2024). “Special Issue on Probing the Open Ocean With the Research Sailing Yacht Eugen Seibold for Climate Geochemistry” JGR-Atmospheres. https://doi.org/10.1029/2023JD040581
18. Jonathan D. Cybulski, Nicolas N Duprey, Benoit Thibodeau, Moriaki Yasuhara, Naomi Geeraert, Nicole Leonard, Hubert B Vonhof, Alfredo Martínez-García, David M. Baker. (2023). “Coral carbonate-bound isotopes reveal monsoonal influence on nitrogen sources in Southeastern China's Greater Bay Area from the mid-Holocene until the Anthropocene.” Marine Pollution Bulletin, 197, p. 115757. https://doi.org/10.1016/j.marpolbul.2023.115757.
17. Jonathan D. Cybulski, John Doherty, Carly LaRoche#, Kelly Donovan Gutkowski#, Zizhan Luo, Elizabeth J. Malloy, Laurel MacMillan, Laurie Raymundo, Kiho Kim. (2023). “Using coral holes to explore the historical ecology of Guam’s coral reefs.” Coral reefs 1-7. https://doi.org/10.1007/s00338-023-02442-z
16. Jonathan D. Cybulski, Kit Sum Leung, Carmen Oi Ning Leung, David M Baker, Terence Kin Wah Lee. (2023). “Isotopic tracing of de novo fatty-acid and sterol biosynthesis using 13C compound-specific stable isotope analysis.” STAR Protocols. https://doi.org/10.1016/j.xpro.2023.102506
15. Mamo, Briony L., Jonathan D. Cybulski, Yuanyuan Hong, Paul G. Harnik, Anne Chao, Akira Tsujimoto, Chih-Lin Wei, David M. Baker, and Moriaki Yasuhara. (2023). "Modern biogeography of benthic foraminifera in an urbanized tropical marine ecosystem." Geological Society, London, Special Publications 529, no. 1: SP529-2022. https://doi.org/10.1144/SP529-2022-17
14. Robinson, Rebecca S., Sandi M. Smart, Jonathan D. Cybulski*, Kelton W. McMahon, Basia Marcks, and Catherine Nowakowski. (2023). "Insights from fossil-bound nitrogen isotopes in diatoms, foraminifera, and corals." Annual Review of Marine Science 15. 407-430. https://doi.org/10.1146/annurev-marine-032122-104001
13. Yasuhara, Moriaki, Huai-Hsuan May Huang, Markus Reuter, Skye Yunshu Tian, Jonathan D. Cybulski*, Aaron O’Dea, Briony L. Mamo et al. (2022). "Hotspots of Cenozoic tropical marine biodiversity." In Oceanography and Marine Biology: An Annual Review, Volume 60, pp. 243-300. https://doi.org/10.1201/9781003288602-5
12. Dillon, Erin M., Jaleigh Q. Pier, Jansen A. Smith, Nussaïbah B. Raja, Danijela Dimitrijević, Elizabeth L. Austin, Jonathan D. Cybulski et al. (2022). "What is conservation paleobiology? Tracking 20 years of research and development." Frontiers in Ecology and Evolution. https://doi.org/10.3389/fevo.2022.1031483
11. Lüdecke T, Leichliter JN, Aldeias V, Bamford MK, Biro D, Braun DR, Capelli C, Jonathan D. Cybulski, Duprey NN, Ferreira da Silva MJ, Foreman AD, Habermann JM, Haug GH, Martínez FI, Mathe J, Mulch A, Sigman DM, Vonhof H, Bobe R, Carvalho S and Martínez-García A. (2022). “Carbon, nitrogen, and oxygen stable isotopes in modern tooth enamel: A case study from Gorongosa National Park, central Mozambique.” Frontiers in Ecology and Evolution, 10:958032. https://doi.org/10.3389/fevo.2022.958032.
10. Jonathan D. Cybulski*, Christina Skinner, Zhongyue Wan, Carmen KM Wong#, Robert J. Toonen, Michelle R. Gaither, Keryea Soong, Alex SJ Wyatt, and David M. Baker. (2022). "Improving stable isotope assessments of inter‐and intra‐species variation in coral reef fish trophic strategies." Ecology and Evolution 12, no. 9. https://doi.org/10.1002/ece3.9221
9. Etienne Mok, Carmen Oi-Ning Leung, Lei Zhou, Martina Mang Leng Lei, Hoi Wing Leung, Man Tong, Tin Lok Wong, Eunice Lau, Irene Oi-Lin Ng, Jin Ding, Jing-Ping Yun, Jun Yu, Hui-lian Zhu, Chi Ho Lin, Dan Lindholm, Kit Sum Leung, Jonathan D. Cybulski, David Baker, Stephanie Ma, and Terence Lee. (2022). “Caspase-3-induced activation of SREBP2 drives drug resistance via promotion of cholesterol biosynthesis in hepatocellular carcinoma.” Cancer Research. https://doi.org/10.1158/0008-5472.CAN-21-2934.
8. Hong, Yuanyuan, Moriaki Yasuhara, Hokuto Iwatani, Paul G. Harnik, Anne Chao, Jonathan D. Cybulski, Yuan Liu, Yuefei Ruan, Xiangdong Li, and Chih-Lin Wei. (2022). "Benthic ostracod diversity and biogeography in an urbanized seascape." Marine Micropaleontology: 102067. https://doi.org/10.1016/j.marmicro.2021.102067
7. Jonathan D. Cybulski. (2021). Hong Kong's Coral Assemblages Through Time: A Paleoecological and Geochemical Look at Human-driven Change. Ph.D. Thesis. The University of Hong Kong Libraries.
6. Alexandra Astrid Andersson, Luke Gibson, David M. Baker, Jonathan D. Cybulski, Sifeng Wang, Banson Leung, L. M. Chu, Caroline E. Dingle. (2021). “Stable isotope analysis as a tool to detect illegal trade in critically endangered cockatoos.” Animal Conservation. https://doi.org/10.1111/acv.12705
5. Christine Ferrier-Pagès, Stephane Martinez, Renaud Grover, Jonathan D. Cybulski, Eli Shemesh, Dan Tchernov. (2021). “Tracing the trophic plasticity of the coral-dinoflagellate symbiosis using amino acid compound-specific stable isotope analysis”. Microorganisms, 9(1), 182. https://doi.org/10.3390/microorganisms9010182
4. Jonathan D. Cybulski, Stefan Husa, Nico Duprey, Briony Mamo, Moriaki Yasuhara, Jian-Wen Qiu, David M. Baker. (2020). “Coral reef diversity losses in China’s Greater Bay Area were driven by regional stressors.” Science Advances. Vol 6, Issue 40. https://doi.org/10.1126/sciadv.abb1046
3. Duprey, Nicolas; Wang, Tony; Kim, Taihun; Jonathan D. Cybulski; Vonhof, Hubert; Crutzen, Paul; Haug, Gerald; Sigman, Daniel; Martínez-García, Alfredo; Baker, David. (2020). “Megacity development and the demise of coastal coral communities: evidence from coral skeleton δ15N records in the Pearl River Estuary.” Global Change Biology. https://doi.org/10.1111/gcb.14923
2. LaRoche, Carly, Benjamin Goldstein, Jonathan D. Cybulski, Laurie J. Raymundo, Lillian R. Aoki, Kiho Kim. (2018). “A decade of change in Enhalus acoroides seagrass meadows in Guam, Mariana Islands.” Marine and Freshwater Research. 70(2) 246-254. https://doi.org/10.1071/MF18062
1. MacAvoy, S. E., Cortese, N.,
Jonathan D. Cybulski, Hohn, A. A. and Macko, S. A. (2017). “Sources of stable isotope variation among stranded Western Atlantic dolphins (Tursiops truncatus) in North Carolina.” Marine Mammal Science, 33: 1224-1234.
https://doi.org/10.1111/mms.12425